Everything that has an end, has a beginning...
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I haven't beaten Chamber 13 yet, but I somehow managed to trap my companion cube in the class box that houses one of those pipes on the upper floor. I had a portal near it, and ran through with the cube in hand (not really knowing what i was doing, just experimenting). It somehow dropped into the glass container and is stuck there. I simply restarted the level though, so it's not a big deal.
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